Publications - Molecular and Developmental Genetics

2012

Publications

- Rademacher, E.H., Offringa R. (2012) Evolutionary Adaptations of Plant AGC Kinases: From Light Signaling to Cell Polarity Regulation. Front Plant Sci. 3:250.

- Knip M, de Pater S, Hooykaas PJ. (2012) The SLEEPER genes: a transposase-derived angiosperm-specific gene family. BMC Plant Biol. 12:192.

- Tiwari A, Vivian-Smith A, Ljung K, Offringa R, Heuvelink E. (2012) Physiological and morphological changes during early and later stages of fruit growth in Capsicum annuum. Physiol Plant.

- Zahrádka J, van Heusden GP, Sychrová H. (2012) Yeast 14-3-3 proteins participate in the regulation of cell cation homeostasis via interaction with Nha1 alkali-metal-cation/proton antiporter. Biochim Biophys Acta. 1820(7):849-58.

- Boot KJ, Libbenga KR, Hille SC, Offringa R, van Duijn B. (2012) Polar auxin transport: an early invention. J Exp Bot. 63(11):4213-8

Dissertations
- Marijn Knip. DAYSLEEPER. From genomic parasite to indispensable gene. 22 November 2012. Promotor: Prof. Dr. P.J.J. Hooykaas, Co-promoter: Dr B.S. de Pater.

2011

Publications

- Claessen D and Dijkhuizen L (2011). Streptomyceten – van antibiotica tot Alzheimer. Book chapter in “De microcanon”.

- Ding Z, Galván-Ampudia CS, Demarsy E, Łangowski Ł, Kleine-Vehn J, Fan Y, Morita MT, Tasaka M, Fankhauser C, Offringa R, Friml J (2011) Light-mediated polarization of the PIN3 auxin transporter for the phototropic response in Arabidopsis. Nature Cell Biol. 13, 447-452.

- Gaussand GMDJM, Jia Q, van der Graaff E, Lamers GEM, Fransz PF, Hooykaas PJJ and de Pater BS (2011) Programmed cell death in leaves of Arabidopsis spontaneous necrotic spot (sns-D) mutant correlates with increased expression of the eukaryotic translation inintiation factor eIF4B2. Front Plant Phys 2:9.

- Koes, R., P.J.J.Hooykaas (2011) Agrobacterium tumefaciens: genetische modificatie avant la letter. Book chapter in Microcanon, p201-203. (H. Smit, W. Reijnders, J. van Doorn, J. van der Oost, P. Willemsen, eds) Veen Magazines, Diemen.

- Sawyer EB, Claessen D, Haas M, Hurgobin B and Gras SL (2011). The assembly of individual chaplin peptides from Streptomyces coelicolor into functional amyloid fibrils. PLOS One 6 (4), e18839.

- Tiwari A, Vivian-Smith A,  Voorrips RE, Habets MEJ, Xue LB, Offringa R and Heuvelink E (2011) Parthenocarpic potential in Capsicum annuum L. is enhanced by carpelloid structures and controlled by a single recessive gene. BMC Plant Biology 2011, 11:143.

- Wakeel, A., A. den Dulk-Ras, P.J.J. Hooykaas, J.W. McBride (2011) Ehrlichia chaffeensis tandem repeat proteins are related to the RTX family of toxins.  Frontiers in Cellular and Infection Microbiology 1: article22 (19 pag)

Dissertations
- Qi Jia. DNA repair and gene targeting in plant end-joining mutants. 21 April 2011. Promotor: Prof. Dr. P.J.J. Hooykaas, Co-promoter: Dr B.S. de Pater.

- Maartje van Kregten. VirD2 of Agrobacterium tumefaciens functional domains and biotechnological applications. 19 May 2011. Promotor: Prof. Dr. P.J.J. Hooykaas, Co-promoter: Dr E.J.  van der Zaal.

2010

Publications
- Dhonukshe P, Huang F, Galvan-Ampudia CS, Mähönen AP, Kleine-Vehn J, Xu J, Ab Quint A, Prasad K, Friml J, Scheres B, and Offringa R (2010) Plasma membrane-bound AGC3 kinases phosphorylate PIN auxin carriers at TPRXS(N/S) motifs to direct apical PIN recycling. Development 137:3245-3255.

- de Boer P, Bastiaans J, Touw H, Kerkman R, Bronkhof J, van den Berg M, Offringa R (2010) Highly efficient gene targeting in Penicillium chrysogenum using the bi-partite approach in Δlig4 or Δku70 mutants. Fungal Genetics and Biology 47:839-846.

- Dietvorst J, Walsh MC, van Heusden GPH, Steensma HY (2010) Comparison of the MTT1- and MAL31-like maltose transporter genes in lager yeast strains. FEMS Microbiol. Lett. 310: 152-157

- Huang F, Kemel Zago M, Abas L, van Marion A, Galván-Ampudia CS, and Offringa R (2010) Phosphorylation of Conserved PIN Motifs Directs Arabidopsis PIN1 Polarity and Auxin Transport. Plant Cell 22: 1129-1142

- Hooykaas PJJ (2010) Plant transformation. In: Encyclopedia of Life Sciences (ELS) www.els.net Wiley, UK.

- Kleine-Vehn J, Huang F, Naramoto S, Zhang J, Michniewicz M, Offringa R, Friml J. PIN auxin efflux carrier polarity is regulated by PINOID kinase-mediated recruitment into GNOM-independent trafficking in Arabidopsis. (2009) Plant Cell :3839-49

- Lindhout BI, Meckel T, van der Zaal BJ. (2010) Zinc finger-mediated live cell imaging in Arabidopsis roots. Methods Mol Biol. 649:383-98.

- Osnato M, Stile MR, Wang Y, Meynard D, Curiale S, Guiderdoni E, Liu Y, Horner DS,Ouwerkerk PBF, Pozzi C, Müller KJ, Salamini F, Rossini L. (2010) Cross-Talk
between the KNOX and Ethylene Pathways Is Mediated by Intron-Binding\ Transcription Factors in Barley (2010) Plant Physiol 154:1616-1632.

- Snoek ISI, Siew L. Tai, Jack T. Pronk, H. Yde Steensma and Jean-Marc Daran (2010) Involvement of Snf7p and Rim101p in the transcriptional regulation of TIR1 and other anaerobically upregulated genes in Saccharomyces cerevisiae FEMS Yeast Research 10: 367–384.

- Song GS, Zhai HL, Peng YG, Zhang L, Wei G, Chen XY, Xiao YG, Wang L, Chen YJ, Wu B, Chen B, Zhang Y, Chen H, Feng XJ, Gong WK, Liu Y, Yin ZJ, Wang F, Liu GZ, Xu HL, Wei XL, Zhao XL, Ouwerkerk PBF, Hankemeier T, Reijmers T, Heijden RV, Lu CM, Wang M, Greef JV, Zhu Z. (2010)  Comparative Transcriptional Profiling and Preliminary Study on Heterosis Mechanism of Super-Hybrid Rice Mol Plant 3:1012-1025.

Dissertations
- Fang Huang. PIN protein phosphorylation by plant AGC3 kinases and its role in polar auxin transport. 1 September 2010. Promoter: Prof. Dr. P.J.J. Hooykaas, Co-promoter: Dr R. Offringa.

 

2009

Publications
- Almeida AJ, Cunha C, Carmona JA, Sampaio-Marques B. Carvalho A, Malavazi I, Steensma HY, Johnson DI, Leão C, Logarinho E, Goldman GH, Castro AG, Ludovico P and Rodrigues F (2009) Cdc42p controls yeast-cell shape and virulence of Paracoccidioides brasiliensis. Fungal Genet Biol. 46: 919-926

- Bruckmann A, Hensbergen PJ, Balog CI, Deelder AM, Brandt R, Snoek IS, Steensma HY and van Heusden GPH (2009) Proteome analysis of aerobically and anaerobically grown Saccharomyces cerevisiae cells. J Proteomics 71: 662-669

- Fuentes S and Vivian-Smith A (2009). Fruit development and seed dispersal, chapter 4: Fertilization and fruit Initiation. Annual Plant Reviews 38: 107-171

- Gerber S, Hasenbrink G, Hendriksen W T, van Heusden GPH, Ludwig J, Klipp E and Lichtenberg-Fraté H (2009) Graphical analysis and experimental evaluation of Saccharomyces cerevisiae PTRK1/2 and PBMH1/2 promoter region. Genome Informatics 22, 11-20

- van Heusden GPH (2009) 14-3-3 proteins: insights from genome-wide studies in yeast. Genomics 94: 287-293

- Hooykaas PJJ (2009) Plant transformation. In: Encyclopedia of Life Sciences (ELS) www.els.net Wiley, UK.

- Kleine-Vehn J, Huang F, Naramoto S, Zhang J, Michniewicz M, Offringa R and Friml J (2009) PIN auxin efflux carrier polarity is regulated by PINOID kinase-mediated recruitment into GNOM-independent trafficking in Arabidopsis. Plant Cell 21: 3839-3849.

- van Kregten M, Lindhout BI, Hooykaas PJJ and van der Zaal BJ (2009) Agrobacterium-mediated T-DNA transfer and integration by minimal VirD2 consisting of the relaxase domain and a type IV secretion system translocation signal. Molecular Plant-Microbe Interactions 22:1356-1365.

- Lu J, den Dulk-Ras A, Hooykaas PJJ and Glover JNM (2009) Agrobacterium tumefaciens VirC2 enhances T-DNA transfer and virulence through its C-terminal ribbon– helix– helix DNA-binding fold. Proc. Natl. Acad. Sci. USA 106: 9643-9648.

- de Pater S, Neuteboom LW, Pinas JE, Hooykaas PJJ and van der Zaal BJ (2009) ZFN-induced mutagenesis and gene-targeting in Arabidopsis through Agrobacterium-mediated floral dip transformation. Plant Biotech. J. 7: 821-835.

- Qu S, Jeon JS, Ouwerkerk PBF, Bellizzi M, Leach J, Ronald P and Wang G. (2009) Construction and application of efficient Ac-Ds transposon tagging vectors in rice. J.Integr. Plant Biol. 51: 982-992.

- Robert HS, Quint A, Brand D, Vivian-Smith A and Offringa R (2009) BTB and TAZ domain scaffold proteins perform a crucial function in Arabidopsis development. Plant J. 58: 109-121.

- dos Santos Maraschin F, Memelink J and Offringa R (2009) Auxin-induced, SCFTIR1-mediated poly-ubiquitination marks AUX/IAA proteins for degradation. Plant J. 59: 100-109.

- Slamet-Loedin IH, Purwantomo S, Ouwerkerk PBF and Nugroho S(2009) Biotechnology and transposon-tagging for improving drought-resistance in rice for Indonesia. In: Drought Frontiers in Rice: Crop improvement for increased rainfed production. Eds. Serraj R, Hardy B and Bennett J. Singapore, World Scientific Publishing and Los Baños (Philippines), International Rice Research Institute, pp. 351-364.

- Soltani J, van Heusden GPH and Hooykaas PJJ (2009) Deletion of host histone acetyltransferases and deacetylases strongly affects Agrobacterium-mediated transformation of Saccharomyces cerevisiae FEMS Microbiol. Lett. 298: 228-233.

- Sorefan K, Girin T, Liljegren SJ, Ljung K, Robles P, Galvan-Ampudia CS, Offringa R, Friml J, Yanofsky MF and Østergaard L (2009) A regulated auxin minimum is required for seed dispersal in Arabidopsis. Nature 459: 583-587.

- Staneloni RJ, Rodriguez-Batiller MJ, Legisa D, Scarpin MR, Agalou A, Cerdan PD, Meijer AH, Ouwerkerk PBF, and Casal JJ (2009) Bell-like homeodomain selectively regulates the high-irradiance response of phytochrome A. Proc. Natl. Acad. Sci. USA 106: 13624-13629.

- Zonneveld BJM (2009) The systematic value of nuclear genome size for all species of Tulipa L. ( Liliaceae) Plant Syst. Evol.  281: 217-245.

- Zonneveld BJM (2009) The DNA content technique and its application to the skunk cabbage Lysichiton Schott. The Plantsman: 104-107.

- Zonneveld BJM and Duncan G (2009) The systematic value of nuclear DNA content for all species of Eucomis L.(Hyacinthaceae), including the new species Eucomis grimshawii Duncan & Zonn.  Plant Syst. Evol. 284-1:99-109.

Dissertations
- Jalal Soltani. Host genes involved in Agrobacterium-mediated transformation. 14 Januari 2009. Promoter: Prof dr PJJ Hooykaas, Co-promoter: Dr GPH van Heusden.

- Felipe dos Santos-Maraschin. Protein ubiquination in auxin signaling and transport. 25 June 2009. Promoter: Prof dr J Memelink, Co-promoter: Dr R Offringa.

- Carlos Galvan Ampudia. Plant AGC protein kinases orient auxin-mediated differential growth and organogenesis. 15 December 2009. Promoter: Prof dr PJJ Hooykaas, Co-promoter: Dr R Offringa.

2008

Publications
- Agalou A, Purwantomo S, Overnäs E, Johannesson H, Zhu X, Estiati A, de Kam RJ, Engström P, Slamet-Loedin IH, Zhu Z, Wang M, Xiong L, Meijer AH and Ouwerkerk PBF (2008) A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Mol Biol 66:87-103.

- Bruckmann A, Hensbergen PJ, Balog CIA, Deelder AM, Brandt R, Snoek ISI, Steensma HY and van Heusden GPH (2008) Proteome analysis of aerobically and anaerobically grownSaccharomyces cerevisiae cells. J. of Proteomics,  doi:10.1016/j.jprot.2008.11.012  
- Michielse CB, Hooykaas PJJ, van den Hondel CAMJJ and Ram AFJ (2008)  Agrobacterium-mediated transformation of the filamentous fungus Aspergillus awamori   Nature Protocols 3: 1671-1678

- Robert HS and Offringa R (2008). Regulation of auxin transport polarity by AGC kinases. Curr. Opin. Plant Biol. 11, 495-502

- Robert HS, Quint A, Brand D, Vivian-Smith A, Offringa R (2008). BTB AND TAZ DOMAIN scaffold proteins perform a crucial function in Arabidopsis development. Plant J. DOI: 10.1111/j.1365-313X.2008.03764.x

- Soltani J, van Heusden GPH and Hooykaas PJJ (2008) Agrobacterium-mediated transformation of non-plant organisms. In Agrobacterium: from biology to biotechnology, pp 649-675.  Edited by T.Tzfira and V. Citovsky. Springer Press, New York.

- Steensma HY, Tomaska L, Reuven P, Nosek J and Brandt R. 2008. Disruption of genes encoding pyruvate dehydrogenase kinases leads to retarded growth on acetate and ethanol in Saccharomyces cerevisiae. Yeast 25, 9-19.
- Supena EDJ, Winarto B, Riksen T, Dubas E, van Lammeren A, Offringa R, Boutilier K and Custers J (2008) Regeneration of zygotic-like microspore-derived embryos suggests an important role for the suspensor in early embryo patterning. J. Exp. Bot. 59:803-814.

- Van Heusden GPH and Steensma HY (2008) The Saccharomyces cerevisiae Wss1 protein is only present in mother cells. FEMS Microbiology Letters 282 , 100-104.

- Wang Y, Zhang Y, Xiao Y, Chai C, Wei G, Xu H, Wei X, Ouwerkerk PBF, Wang M, and Zhu Z (2008) Molecular cloning, functional characterization and   expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.). Planta 228: 525-535

- Zago MK, Galvan-Ampudia C and Offringa R (2008) Signaling in auxin-dependent plant development. In Plant Cell Monographs: Plant Growth Signalling, ed. GT Beemster, L Bogre, pp. 155-178. Berlin Heidelberg: Springer-Verlag GmbH
- Zonneveld BJM (2008) The systematic value of nuclear DNA content for all species of Narcissus L. ( Amaryllidaceae) Plant Syst. Evol 275: 109-132.

- Zonneveld BJM (2008) Vier stamvormende Sedums uit Mexico. Succulenta 87: 107-110

Dissertations
- Beatrice Lindhout. Regulatory DNA binding peptides as novel tools for plant functional genomics. 1 October 2008. Promoter: Prof dr PJJ Hooykaas, Co-promoter: Dr Ir EJ van der Zaal.

- Helene Boisivon-Robert. Calcium- and BTB domain protein-modulated PINOID kinase directs polar auxin transport. 21 May 2008. Promoter: Prof dr PJJ Hooykaas, Co-promoter: Dr R Offringa.

2007

Publications
- Almeida AJ, Carmona JA, Cunha C, Carvalho A, Rappleye CA, Goldman WE, Hooykaas PJJ, Leao C, Ludovico P and Rodrigues F (2007) Towards a molecular genetic system for the pathogenic fungus Paracoccidioides brasilensis Fungal Genetics and Biology 44: 1387-1398.

- Bruckmann A, Hensbergen PJ, Balog CIA, Deelder AM, Steensma HY and van Heusden GPH (2007) Post-transcriptional control of the Saccharomyces cerevisiae proteome by 14-3-3 proteins.  J. Proteome Res. 6: 1689-1699.

- Copenhaver GP and Hooykaas PJJ (2007) Plant DNA repair and recombination on the French Mediterranean. EMBO reports 8: 1115-1119.

- Dietvorst J, Blieck L, Brandt R, van Dijck P and Steensma HY (2007) Attachment of MAL32-encoded maltase on the outside of yeast cells improves maltotriose utilization. Yeast 24: 27-38.

- Dreni L, Jacchia S, Fornara F, Fornari M, Ouwerkerk PBF, An G, Colombo L, Kater MM (2007) The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant J 52: 690-699. Epub 2007 Sep 17.

- Galvan-Ampudia C and Offringa R (2007) Plant evolution: AGC kinases tell the auxin tale. Trends in Plant Science 12: 541-547.
- Goetz M, Hooper LC, Johnson SD, Rodrigues JC, Vivian-Smith A and Koltunow AM 2007) Expression of aberrant forms of AUXIN RESPONSE FACTOR8 stimulates parthenocarpy in Arabidopsis and tomato. Plant Physiology 145: 351-366.

- Gommans WM, McLaughlin PM, Lindhout BI, Segal DJ, Wiegman DJ, Haisma HJ, van der Zaal BJ and Rots MG (2007) Engineering zinc finger protein transcription factors to downregulate the epithelial glycoprotein-2 promoter as a novel anti-cancer treatment. Mol Carcinog. 46: 391-401.

- Katiyar-Agarwal S., Gao S, Vivian-Smith A and Jin H (2007) A novel class of bacteria-induced small RNAs in Arabidopsis. Genes and Development 21: 3123-3134.

- Lin M,  den Dulk-Ras A, Hooykaas PJJ and Rikihisa Y (2007) Anaplasma phagocytophilum AnkA is secreted by type IV secretion system is tyrosine phosphorylated by Abl-1 to facilitate infection. Cellular Microbiology 9: 2644-2657.

- Laplaze L, Benkova E, Casimiro I, Maes L, Vanneste S, Swarup R, Weijers D, Calvo V, Parizot B, Herrera-Rodriguez MB, Offringa R, Graham N, Doumas P, Friml J, Bogusz D, Beeckman T and Bennett M (2007) Cytokinins act directly on lateral root founder cells to inhibit root initiation. Plant Cell 19: 3889-3900.

- Lindhout BI, Fransz P, Tessadori F, Meckel T, Hooykaas PJJand van der Zaal BJ (2007) Nucl Acids Res. 35: e107, p1-9.

- Louwerse JD, van Lier MCM, van der Steen DM, de Vlaam CMT, Hooykaas PJJand Vergunst A (2007) Stable recombinase-mediated cassette exchange in Arabidopsis using Agrobacterium tumefaciens. Plant Physiology 145: 1282-1293.

- Michniewicz M, Zago MK, Abas L, Weijers D, Schweighofer A, Meskiene I,  Heisler MG, Ohno C, Zhang J, Huang F, Schwab R, Weigel D, Meyerowitz EM, Luschnig C, Offringa R and Friml J (2007) Antagonistic Regulation of PIN phosphorylation by PP2A and PINOID directs auxin flux. Cell 130: 1044-1056.


- Purwantomo S, Mulyaningsih ES, Nugroho S, Estiati A, Slamet-Loedin IH, Meijer AH and Ouwerkerk PBF (2007) Transgenic breeding for drought tolerance and blast resistance in rice. Proceedings symposium on application of plant biotechnology for agribusiness. IPB Press, Bogor, Indonesia, ISBN 978-979-493-137-0, Eds. Löffler H, Syamsu K, pp. 11-24.

- Snoek ISI and Steensma HY (2007) Review: Factors involved in anaerobic growth of Saccharomyces cerevisiae. Yeast 24: 1-10.

- Soltani J, van Heusden GPH and Hooykaas PJJ (2007) Agrobacterium-mediated transformation of non-plant organisms. In Agrobacterium: from biology to biotechnology, pp 649-675.  Edited by T.Tzfira and V. Citovsky. Springer Press, New York.

- Zonneveld BJM (2007) The mysterious origin of Hosta ventricosa revealed The Hosta Journal 37-1: 74-76.

- Zonneveld BJM (2007) Nuclear DNA content of ploidy chimeras of Hosta Tratt. (Hostaceae) demonstrate three apical layers in all organs, but not in the adventitious root.  Pl. Syst. Evol. 269: 29-38.

- Zonneveld BJM (2007) Verklaring voor bladkleuren in Agave americana. Succulenta 86-1: 15-21.

- Zonneveld BJM (2007) Enkele aparte sedums en hun hybriden. Succulenta 86-6: 272-276.


Dissertations

- Istar Snoek, Identification and regulation of genes involved in anaerobic growth of Saccharomyces cerevisiae.  (ISBN 978-90-74384-06-3) 1 March 2007. Promotor: Prof.dr. P.J.J. Hooykaas, co-promotor: Dr. H.Y. Steensma.

- Gwenael Gaussand, Programmed cell death in plants and caspase-like activities, 25 April 2007. Promotor: Prof.dr. P.J.J. Hooykaas, co-promotor: Dr. Mei Wang.

Alvarez-Curto, E., Developmental regulation and evolution of cAMP signalling in Dictyostelium PhD Thesis, Leiden University, 23 October 2007. Promotores: Prof.dr. P.J.J. Hooykaas, Prof.dr. P. Schaap.

2006

Publications
- Carle A, Hoppner C, Aly KA, Yuan Q, den Dulk-Ras A, Vergunst A, O’Callaghan D and Baron C (2006). The Brucella suis Type IV secretion system assembles in the cell envelope of the heterologous host Agrobacterium tumefaciens and increases incQ plasmid pLS1 recipient competence. Infection & Immunity 74: 108-117.

- De Pater S, Caspers M, Kottenhagen M, Meima H, ter Stege R and de Vetten N (2006). Manipulation of starch granule size distribution in potato tubers by modulation of plastid division. Plant Biotechnology Journal 4: 123-134. 

- Deng X, Phillips J, Bräutigam A, Engström P, Johannesson H, Meijer AH, Ouwerkerk PBF, Ruberti I, Salinas J, Vera P, Lannacone R and Bartels D (2006). A homeodomain leucine zipper gene from Craterostigma plantagineum regulates abscisic acid responsive gene expression and physiological responses. Plant Mol Biol 61: 469-489.

- Friml J, Benfey P, Benkova E, Bennett M, Berleth T, Geldner N, Grebe M,  Heisler M, Hejatko J, Jurgens G, Laux T, Lindsey K, Lukowitz W, Luschnig C, Offringa R, Scheres B, Swarup R, Torres-Ruiz R, Weijers D and Zazimalova E (2006). Apical-basal polarity: why plant cells don’t stand on their heads. Trends Plant Sci.11: 12-14

- Garcia-Rodriguez FM, Schrammeijer B and Hooykaas PJJ (2006). The Agrobacterium VirE3 effector protein: a potential plant transcriptional activator. Nucleic Acids Research 34: 6496-6504.

- Goetz M,  Vivian-Smith A, Johnson SD and Koltunow AM (2006). AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis. Plant Cell 18: 1873-1886.

- Hodges LD, Vergunst AC, Neal-McKinney J, den Dulk-Ras A, Moyer DM, Hooykaas PJJ and Ream W (2006). Agrobacterium rhizogenes GALLS protein contains domains for ATP binding, nuclear localization, and type IV secretion. J. Bacteriol. 188: 8222-8230.

- Hooykaas PJJ, den Dulk-Ras A, Bundock P, Soltani J, Van Attikum H and van Heusden GPH (2006). Agrobacterium Protocols: Transformation of Yeast (Saccharomyces cerevisiae). In Methods in Molecular Biology, Volume 2 , pp 465-473. Edited by K. Wang, Humana Press, Totowa, USA.

- Lindhout BI, Pinas JE, Hooykaas PJJ and van der Zaal BJ (2006). Employing libraries of zinc finger artificial transcription factors to screen for homologous recombination mutants in Arabidopsis. Plant Journal 48: 475- 483.

- Maraschin SF, Caspers M, Potokina E, Wulfert F, Corredor-Adámez M, Graner A, Spaink H.P. and Wang M. (2006). cDNA array analysis of stress-induced gene expression in barley androgenesis. Physiologia Plantarum 127: 525-550.

- Neuteboom LW, Lindhout BI, Saman I., Hooykaas PJJ, van der Zaal BJ (2006). Effects of different zinc finger transcription factors on genomic targets. Biochem.Biophys.Res.Commun.339: 263-270.

- Ruttink T, Boot K, Kijne J, Bisseling T and Franssen H (2006). ENOD40 affects elongation growth in tobacco bright yellow-2 cells by alteration of ethylene biosynthesis kinetics. J. of Exp. Botany 57: 3271-3282

- Snoek ISI and Steensma HY (2006). Why does Kluyveromyces lactis not grow under anaerobic conditions? Comparison of essential anaerobic genes of Saccharomyces cerevisiae with the Kluyveromyces lactis genome. FEMS Yeast Res. 6: 393-403.

- Van Heusden GPH and Steensma HY (2006). Yeast 14-3-3 proteins. Yeast 23: 159-174.

- Zonneveld B and Duncan G (2006). Genome size for the species of Nerine Herb. (Amarillydaceae) and its evident correlation with growth cycle, leaf width and other morphological characters. Plant Syst. Evol. 257 : 251-260. afety 29: 369-369.


Dissertations

- Judith.Dietvorst,  Maltotriose utilization of lager yeast strains in high-gravity brewing. 9 May 2006. Promotor: Prof.dr. P.J.J. Hooykaas, Co-promoter: Dr ir HY Steensma.

- Marcelo Kemel Zago, Components and targets of the PINOID signaling complex in Arabidopsis thaliana. 15 June 2006. Promotor: Prof.dr. P.J.J.Hooykaas, co-promoter Dr R Offringa.

2005

Publications

- Bundock P and Hooykaas P (2005) An Arabidopsis hAT-like transposase is essential for plant development. Nature 436: 282 -285.

- Dietvorst J, Londesborough J, Steensma HY (2005). Maltotriose utilization in lager yeast strains: MTT1 encodes a maltotriose transporter. Yeast 22:775-88.

- Van Enckevoort LE ,Droc G, Piffanelli P, Greco R, Gagneur C., Weber C, Gonzalez VM, Cabot P, .Fornara F, Berri S, Miro B, Lan P, Rafel M. Capelli T, Puigdomenec P, Ouwerkerk PBF, Meijer AH, Pe E, Colombo L, Christou P, Guiderdoni E and Pereira A(2005) EU-OSTID: A collection of transposon insertional mutants for functional genomics in rice. Plant Mol Biol 59: 99-110.

- Greco R, Ouwerkerk PBF, Pereira A (2005) Suppression of an atypically spliced rice CACTA transposon transcript in transgenic plants. Genetics 169: 2383-2387.

- Van Heusden GPH (2005) 14-3-3 proteins: Regulators of numerous eukaryotic proteins. Life 57:623-9.

- Hooykaas PJJ (2005). Transformation mediated by Agrobacterium tumefaciens. In: Advances in fungal biotechnology for industry, agriculture, and medicine, chapter 4, pp. 39-63.

- Michielse CB, Hooykaas PJJ, van den Hondel CAMJJ and Ram AFJ (2005) Agrobacterium-mediated transformation as a tool for functional genomics in fungi. Curr. Genetics 48: 1-17.

- Schulein R, Guye P, Rhomberg TA, Schmid MC, Schrőder G, Vergunst AC, Carena I and Dehio C (2005). A bipartite signal mediates the transfer of type IV secretion substrates of Bartonella henselae into human cells. Proc.Natl.Acad.Sci.USA 102: 856-861.

- Weijers D, Meurette O, Sauer M, Friml J, Ljung K, Sandberg G, Hooykaas P and Offringa R (2005).  Maintenance of embryonic auxin gradients for apical-basal patterning by PIN-dependent auxin transport. Plant Cell 17: 2517-2526.

- Vergunst AC, van Lier MCM, den Dulk-Ras A, Grosse Stűve TA, Ouwehand A and Hooykaas PJJ (2005). Positive charge is an important feature of the C-terminal transport signal of the VirB/D4-translocated proteins of Agrobacterium. Proc.Natl.Acad.Sci.USA 102: 832-837.

- Zonneveld BJM, Leitch IJ and Bennett MD (2005) First nuclear DNA amounts in more than 300 Angiosperms. Annals of Botany 96: 229-244.

- Zonneveld BJM and van Jaarsveld EJ (2005) Taxonomic implications of genome size for all species of the genus Gasteria Duval (Aloaceae) Plant Syst. Evol. 251: 217-227.

Webredactie Science - Last edited: 03 Dec 2012